Welcome to pdbtop's tutorial! ===================================== .. .. hint:: The best way to support the development of pdbtop is that in any published works using pdbtop, please include the following references: - Zhang, J. `Atom Typing Using Graph Representation Learning: How Do Models Learn Chemistry? `_ *J. Chem. Phys.* **2022**, *156*, 204108. The latest information of pdbtop can be found at: ``_ We suggest that users **go over the tutorials and try the examples.** The tutorials are designed to be simple and easy to follow. Note that not all options are discussed in tutorials. If you want to know more about the details of pdbtop, please refer to the manual. The manual is designed to describe all options. .. toctree:: :maxdepth: 2 :caption: Tutorials tutorial-0.rst tutorial-1.rst tutorial-2.rst tutorial-3.rst tutorial-4.rst tutorial-5.rst tutorial-6.rst tutorial-7.rst .. toctree:: :numbered: 5 :maxdepth: 2 :caption: Manual check.rst remove.rst topol.rst modify.rst ligand.rst pdb.rst psf.rst solvate.rst